Index

A

about() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) accumulation_ms (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_dld_image_xyt_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_tdc_histo_params_t attribute) ACK (pyccapt.control.devices.pfeiffer_gauges.TPG26x attribute) adc (pyccapt.control.tdc_surface_concept.scTDC.dld_event_t attribute) ADC (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection attribute) adc (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) add() (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection method) add_3d_pipe() (pyccapt.control.tdc_surface_concept.scTDC.Device method) add_columns() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_data_loader) add_end_of_measurement_callback() (pyccapt.control.tdc_surface_concept.scTDC.Device method) add_file_handler() (in module pyccapt.calibration.core.logging_library) add_statistics_pipe() (pyccapt.control.tdc_surface_concept.scTDC.Device method) add_t_pipe() (pyccapt.control.tdc_surface_concept.scTDC.Device method) add_tdc_histo_pipe() (pyccapt.control.tdc_surface_concept.scTDC.Device method) add_xt_pipe() (pyccapt.control.tdc_surface_concept.scTDC.Device method) add_xy_pipe() (pyccapt.control.tdc_surface_concept.scTDC.Device method) add_yt_pipe() (pyccapt.control.tdc_surface_concept.scTDC.Device method) adjust_labels() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) algorithm (pyccapt.calibration.clustering.clustering.MinMaxClusterResult attribute) (pyccapt.calibration.clustering.MinMaxClusterResult attribute) allocator_cb (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_dld_image_xyt_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_statistics_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_tdc_histo_params_t attribute)

allocator_owner (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_dld_image_xyt_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_statistics_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_tdc_histo_params_t attribute) animate() (in module pyccapt.control.core.baking_loging) annotate_plotter() (pyccapt.calibration.core.interactive_point_identification.AnnotationFinder method) annotates_plotter() (pyccapt.calibration.core.interactive_point_identification.AnnotationFinder method) AnnotationFinder (class in pyccapt.calibration.core.interactive_point_identification) AnnoteFinder (class in pyccapt.calibration.core.interactive_point_identification) AOM() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) AOMDisable() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) AOMEnable() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) AOMRead() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) AOMState() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) apply_crop() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_special_crop) (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_temporal_crop) apply_noise_to_structure() (in module pyccapt.calibration.reconstructions.crystal_helper) APT_Exp_Control (class in pyccapt.control.apt.apt_exp_control) apt_to_ccapt() (in module pyccapt.calibration.leap_tools.ccapt_tools) AptHistPlotter (class in pyccapt.calibration.core.mc_plot) ato_to_ccapt() (in module pyccapt.calibration.data_tools.ato_tools) atom_probe_recons_Bas_et_al() (in module pyccapt.calibration.reconstructions.reconstruction) atom_probe_recons_from_detector_Gault_et_al() (in module pyccapt.calibration.reconstructions.reconstruction) auto_detect_reference_peaks() (in module pyccapt.calibration.core.calibration) auto_exposure_time (pyccapt.control.gui.gui_cameras.SignalEmitter attribute) auto_exposure_time_switch() (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method)

B

BakingWindow (class in pyccapt.control.gui.gui_baking) bcolors (class in pyccapt.control.devices.initialize_devices) bin_vectors_from_distance() (in module pyccapt.calibration.clustering.isosurface) (in module pyccapt.calibration.reconstructions.iso_surface) bin_width_optimizer_1d() (in module pyccapt.calibration.core.hist_bin_optimizer) bin_width_optimizer_2d() (in module pyccapt.calibration.core.hist_bin_optimizer) binning (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_dld_image_xyt_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_tdc_histo_params_t attribute) BOLD (pyccapt.control.devices.initialize_devices.bcolors attribute) bool_flag_while_loop (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) bowl_correction() (in module pyccapt.calibration.core.calibration) bowl_correction_main() (in module pyccapt.calibration.core.calibration) BufDataCB4 (class in pyccapt.control.devices_test.tdc_surface_concept_t_2) (class in pyccapt.control.devices_test.tdc_surface_concept_t_3) (class in pyccapt.control.tdc_surface_concept.tdc_surface_concept)

buffered_data_callbacks_pipe (class in pyccapt.control.tdc_surface_concept.scTDC) build_calibration_mask() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) build_cluster_context_trace() (in module pyccapt.calibration.clustering) (in module pyccapt.calibration.clustering.clustering) build_cluster_scatter_traces() (in module pyccapt.calibration.clustering) (in module pyccapt.calibration.clustering.clustering) build_element_mask() (in module pyccapt.calibration.reconstructions.iso_surface) build_event_group_mapping() (in module pyccapt.calibration.data_tools.data_loadcrop) build_range_mask() (in module pyccapt.calibration.reconstructions.iso_surface) buttonWidget() (in module pyccapt.calibration.core.widgets) ByteFormat (class in pyccapt.calibration.leap_tools.leap_tools)

C

calculate_element_isosurface() (in module pyccapt.calibration.reconstructions.iso_surface) calculate_iso_value() (in module pyccapt.calibration.reconstructions.iso_surface) calculate_noise() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) calculate_ppi_and_ipp() (in module pyccapt.calibration.data_tools.data_loadcrop) CalibrationError CalibrationInputError CalibrationStateError call_fine_tune_t_0() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_t_0_tune) call_ion_list() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_ion_list) call_ion_selection() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_ion_selection) call_mc_plot() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_mc_plot) call_plot_crop_experiment() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_temporal_crop) call_plot_crop_fdm() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_special_crop) call_visualization() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_visualization) call_voltage_bowl_calibration() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_calibration) call_x_y_z_calculation() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_3d_reconstruction) callbacks (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_callback_params_t attribute) cam_1_exposure_time (pyccapt.control.gui.gui_cameras.SignalEmitter attribute) cam_2_exposure_time (pyccapt.control.gui.gui_cameras.SignalEmitter attribute) cam_3_exposure_time (pyccapt.control.gui.gui_cameras.SignalEmitter attribute) camera() (in module pyccapt.control.devices_test.camera_1) (in module pyccapt.control.devices_test.camera_2) camera_update() (in module pyccapt.control.devices_test.camera_2) cameras_screenshot() (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) CamerasAlignmentWindow (class in pyccapt.control.gui.gui_cameras) CameraWorker (class in pyccapt.control.devices.camera) cams_exposure_time_default (pyccapt.control.gui.gui_cameras.SignalEmitter attribute) cart2pol() (in module pyccapt.calibration.reconstructions.reconstruction) ccapt_to_ato() (in module pyccapt.calibration.data_tools.ato_tools) ccapt_to_epos() (in module pyccapt.calibration.leap_tools.ccapt_tools) ccapt_to_pos() (in module pyccapt.calibration.leap_tools.ccapt_tools) centers (pyccapt.calibration.clustering.clustering.MinMaxClusterResult attribute) (pyccapt.calibration.clustering.MinMaxClusterResult attribute) cfg_comment() (pyccapt.control.tdc_surface_concept.scTDC.scTDC_hdf5lib method) cfg_outfile() (pyccapt.control.tdc_surface_concept.scTDC.scTDC_hdf5lib method) change_frequency_signal_generator() (in module pyccapt.control.devices.signal_generator) change_peak_color() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) channel (pyccapt.control.tdc_surface_concept.scTDC.dld_event_t attribute) CHANNEL (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection attribute) channel (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_dld_image_xyt_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_tdc_histo_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.tdc_event_t attribute) CHAR (pyccapt.calibration.leap_tools.leap_tools.ByteFormat attribute) check4() (in module pyccapt.control.devices_test.tdc_surface_concept_t_3) check_camera_availability() (in module pyccapt.control.devices.camera) check_closed_events() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) check_if_should() (pyccapt.control.gui.gui_cameras.CamerasAlignmentWindow method) (pyccapt.control.gui.gui_visualization.VisualizationWindow method) check_laser_status() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) chunks() (in module pyccapt.calibration.core.ion_selection) CircleSelector (class in pyccapt.calibration.data_tools.selectors_data) cleanup() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method)

clear() (pyccapt.control.tdc_surface_concept.scTDC.Pipe method) clear_calibration_peak_range() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) clear_calibration_selection_mask() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) clear_peak_range() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) clear_to() (pyccapt.control.core.share_variables.Variables method) clear_up() (pyccapt.control.apt.apt_exp_control.APT_Exp_Control method) close() (pyccapt.control.tdc_surface_concept.scTDC.buffered_data_callbacks_pipe method) (pyccapt.control.tdc_surface_concept.scTDC.Pipe method) (pyccapt.control.tdc_surface_concept.scTDC.usercallbacks_pipe method) close_port() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) closeEvent() (pyccapt.control.gui.gui_baking.BakingWindow method) (pyccapt.control.gui.gui_cameras.CamerasAlignmentWindow method) (pyccapt.control.gui.gui_gates.GatesWindow method) (pyccapt.control.gui.gui_laser_control.LaserControlWindow method) (pyccapt.control.gui.gui_main.MyPyCCAPT method) (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) (pyccapt.control.gui.gui_pumps_vacuum.PumpsVacuumWindow method) (pyccapt.control.gui.gui_stage_control.StageControlWindow method) (pyccapt.control.gui.gui_visualization.VisualizationWindow method) cluster_column (pyccapt.calibration.clustering.clustering.MinMaxClusterResult attribute) (pyccapt.calibration.clustering.MinMaxClusterResult attribute) comm() (pyccapt.control.devices.edwards_tic.EdwardsAGC method) (pyccapt.control.devices_test.serial_com_edwards.EdwardsAGC method) command() (in module pyccapt.control.devices_test.serial_com_v_p) command_cryovac() (in module pyccapt.control.devices.initialize_devices) command_edwards() (in module pyccapt.control.devices.initialize_devices) command_v_dc() (in module pyccapt.control.apt.apt_exp_control_func) command_v_p() (in module pyccapt.control.apt.apt_exp_control_func) compute_element_isotope_values_according_to_selected_charge() (in module pyccapt.calibration.core.widgets) concatenate_dataframes_of_dld_grp() (in module pyccapt.calibration.data_tools.data_loadcrop) concatenate_datasets() (in module pyccapt.control.core.control_data_tool) conf (pyccapt.control.gui.gui_stage_control.Ui_Stage_Control attribute) CONSTANT (pyccapt.calibration.leap_tools.leap_tools.DataCategory attribute) convert_mat_to_df() (in module pyccapt.calibration.data_tools.data_tools) copy_npy_to_hdf_surface_concept() (in module pyccapt.control.core.control_data_tool) copy_statistics() (in module pyccapt.control.tdc_surface_concept.scTDC) copy_xytof_from_cobold_txt_to_hdf5() (in module pyccapt.control.tdc_roentdek.cobold_tool) correct_surface_concept_old_data() (in module pyccapt.control.core.control_data_tool) counters (pyccapt.control.tdc_surface_concept.scTDC.statistics_t attribute) counts (pyccapt.calibration.clustering.clustering.MinMaxClusterResult property) (pyccapt.calibration.clustering.MinMaxClusterResult property) counts_read (pyccapt.control.tdc_surface_concept.scTDC.statistics_t attribute) counts_received (pyccapt.control.tdc_surface_concept.scTDC.statistics_t attribute) CR (pyccapt.control.devices.pfeiffer_gauges.TPG26x attribute) create_formula_latex() (in module pyccapt.calibration.core.ion_selection) create_pandas_dataframe() (in module pyccapt.calibration.data_tools.data_loadcrop) crop_data_after_selection() (in module pyccapt.calibration.data_tools.data_loadcrop) crop_dataset() (in module pyccapt.calibration.data_tools.data_loadcrop) crop_dataset_to_new_file() (in module pyccapt.control.core.control_data_tool) current_error() (pyccapt.control.devices_test.serial_com_edwards.EdwardsAGC method) CUSTOM (pyccapt.calibration.leap_tools.leap_tools.DataFormat attribute)

D

daq_tc() (in module pyccapt.control.core.baking_loging) data (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callbacks_params_t attribute) data_field_selection (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callbacks_params_t attribute) data_len (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) data_name (pyccapt.calibration.core.share_variables.Variables property) (pyccapt.calibration.core.Variables property) DataCategory (class in pyccapt.calibration.leap_tools.leap_tools) DataFormat (class in pyccapt.calibration.leap_tools.leap_tools) dataset_instrument_specification_selection() (in module pyccapt.calibration.core.widgets) dc_hold_clicked() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) (pyccapt.control.gui.gui_visualization.Ui_Visualization method) DECIMAL (pyccapt.calibration.leap_tools.leap_tools.DataFormat attribute) deconvolve() (in module pyccapt.calibration.leap_tools.leap_tools) default_exposure_time (pyccapt.control.gui.gui_cameras.SignalEmitter attribute) default_exposure_time_switch() (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) deinitialize() (pyccapt.control.tdc_surface_concept.scTDC.Device method) delete_drs_ox() (pyccapt.control.devices_test.drs.DRS method) (pyccapt.control.drs.drs.DRS method) density_field_selection() (in module pyccapt.calibration.core.widgets) depth (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_dld_image_xyt_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_tdc_histo_params_t attribute) deselect_point() (pyccapt.calibration.core.interactive_point_identification.AnnotationFinder method) deselectAllRowsAndColumns() (pyccapt.calibration.core.gui_ion_select.MyWindow method) deselectPoint() (pyccapt.calibration.core.interactive_point_identification.AnnotationFinder method) detection_rate (pyccapt.control.gui.gui_main.SignalEmitter attribute) detection_rate_range() (pyccapt.control.gui.gui_visualization.Ui_Visualization method) detector_animation() (in module pyccapt.calibration.reconstructions.reconstruction)

Device (class in pyccapt.control.tdc_surface_concept.scTDC) dif1 (pyccapt.control.tdc_surface_concept.scTDC.dld_event_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) dif2 (pyccapt.control.tdc_surface_concept.scTDC.dld_event_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) DigitalGateLogic() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) DigitalGateLogicRead() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) display_color() (in module pyccapt.calibration.core.ion_selection) distance() (in module pyccapt.calibration.core.interactive_point_identification) distances() (in module pyccapt.calibration.core.interactive_point_identification) Div() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) DivRead() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) dld_event (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_callbacks attribute) dld_event_t (class in pyccapt.control.tdc_surface_concept.scTDC) dld_events (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callbacks_params_t attribute) dld_highVoltage (pyccapt.calibration.core.share_variables.Variables property) (pyccapt.calibration.core.Variables property) do_measurement() (pyccapt.control.tdc_surface_concept.scTDC.Device method) (pyccapt.control.tdc_surface_concept.scTDC.usercallbacks_pipe method) draw_annotation() (pyccapt.calibration.core.interactive_point_identification.AnnotationFinder method) draw_qube() (in module pyccapt.calibration.reconstructions.reconstruction) draw_rectangle() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) draw_specific_annotation() (pyccapt.calibration.core.interactive_point_identification.AnnotationFinder method) drawAnnote() (pyccapt.calibration.core.interactive_point_identification.AnnotationFinder method) drawSpecificAnnote() (pyccapt.calibration.core.interactive_point_identification.AnnotationFinder method) dropdownWidget() (in module pyccapt.calibration.core.widgets) DRS (class in pyccapt.control.devices_test.drs) (class in pyccapt.control.drs.drs)

E

EdwardsAGC (class in pyccapt.control.devices.edwards_tic) (class in pyccapt.control.devices_test.serial_com_edwards) efficient_histogram() (in module pyccapt.control.gui.gui_visualization) elapsed_time (pyccapt.control.gui.gui_main.SignalEmitter attribute) elliptical_shape_selector() (in module pyccapt.calibration.data_tools.data_loadcrop) Enable() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) end_of_measure (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_callbacks attribute) end_of_measurement (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callbacks_params_t attribute) ENDC (pyccapt.control.devices.initialize_devices.bcolors attribute) ENQ (pyccapt.control.devices.pfeiffer_gauges.TPG26x attribute) ensure_valid_peak_range() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) epos_to_ccapt() (in module pyccapt.calibration.leap_tools.ccapt_tools) error_message() (pyccapt.control.gui.gui_gates.Ui_Gates method) (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) (pyccapt.control.gui.gui_visualization.Ui_Visualization method)

errorcheck() (in module pyccapt.control.tdc_surface_concept.tdc_surface_concept) estimate_maximum_separation_distance() (in module pyccapt.calibration.clustering) (in module pyccapt.calibration.clustering.clustering) ETX (pyccapt.control.devices.pfeiffer_gauges.TPG26x attribute) event_index (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) events_found (pyccapt.control.tdc_surface_concept.scTDC.statistics_t attribute) events_in_roi (pyccapt.control.tdc_surface_concept.scTDC.statistics_t attribute) events_received (pyccapt.control.tdc_surface_concept.scTDC.statistics_t attribute) experiment_measure() (in module pyccapt.control.drs.drs) (in module pyccapt.control.tdc_roentdek.tdc_roentdek) (in module pyccapt.control.tdc_surface_concept.tdc_surface_concept) experiment_measure_buf() (in module pyccapt.control.devices_test.tdc_roentec_t) exponential_decay_with_linear_and_dc() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) extend_to() (pyccapt.control.core.share_variables.Variables method) extract_data() (in module pyccapt.calibration.data_tools.data_tools)

F

FAIL (pyccapt.control.devices.initialize_devices.bcolors attribute) fetch_dataset_from_dld_grp() (in module pyccapt.calibration.data_tools.data_loadcrop) fetch_dataset_with_tdc() (in module pyccapt.calibration.data_tools.data_loadcrop) fft() (in module pyccapt.calibration.reconstructions.fft) filter_atoms_in_cone_and_hemisphere() (in module pyccapt.calibration.reconstructions.crystal_helper) filter_isosurface_by_size() (in module pyccapt.calibration.reconstructions.iso_surface) filter_tdc_by_dld() (in module pyccapt.calibration.data_tools.data_loadcrop) find_closest_elements() (in module pyccapt.calibration.core.ion_selection) find_consecutive_sequences() (in module pyccapt.calibration.data_tools.raw_data_surface_concept)

find_consecutive_sequences_seperatly() (in module pyccapt.calibration.data_tools.raw_data_surface_concept) find_nth_max_repeated_indices() (in module pyccapt.calibration.data_tools.raw_data_surface_concept) find_peaks_and_widths() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) find_phi_and_theta() (in module pyccapt.calibration.reconstructions.crystal_helper) fix_parentheses() (in module pyccapt.calibration.core.ion_selection) format_ion() (in module pyccapt.calibration.reconstructions.iso_surface) Freq() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) freq_avaliable() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) FreqRead() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method)

G

gates() (pyccapt.control.gui.gui_gates.Ui_Gates method) GatesWindow (class in pyccapt.control.gui.gui_gates) gauge_identification() (pyccapt.control.devices.pfeiffer_gauges.TPG26x method) gauge_type() (pyccapt.control.devices_test.serial_com_edwards.EdwardsAGC method) get_buffer_copy() (pyccapt.control.tdc_surface_concept.scTDC.Pipe method) get_buffer_view() (pyccapt.control.tdc_surface_concept.scTDC.Pipe method) get_calibration_array() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method)

get_calibration_peak_range() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) get_data_tdc_buf() (pyccapt.control.devices_test.tdc_roentec_t.TdcRoentec method) (pyccapt.control.tdc_roentdek.tdc_roentdek.TDC method) get_frequency() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) get_package_version() (in module pyccapt.control.gui.gui_main) get_project_path() (in module pyccapt.calibration.core.share_variables) gui_fname() (in module pyccapt.calibration.data_tools.dataset_path_qt)

H

hdf5_close() (pyccapt.control.tdc_surface_concept.scTDC.Device method) hdf5_disable() (pyccapt.control.tdc_surface_concept.scTDC.Device method) hdf5_enable() (pyccapt.control.tdc_surface_concept.scTDC.Device method) hdf5_lib_version() (pyccapt.control.tdc_surface_concept.scTDC.Device method) hdf5_open() (pyccapt.control.tdc_surface_concept.scTDC.Device method) HDF5DataSelection (class in pyccapt.control.tdc_surface_concept.scTDC) hdf_creator() (in module pyccapt.control.core.hdf5_creator) HEADER (pyccapt.control.devices.initialize_devices.bcolors attribute) heatmap() (in module pyccapt.calibration.reconstructions.reconstruction)

heatmap_fdm_switch_change() (pyccapt.control.gui.gui_visualization.Ui_Visualization method) hideMessage() (pyccapt.control.gui.gui_gates.Ui_Gates method) (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) (pyccapt.control.gui.gui_visualization.Ui_Visualization method) hist_plot() (in module pyccapt.calibration.core.mc_plot) (in module pyccapt.calibration.core.tools) HorizontalZoom (class in pyccapt.calibration.data_tools.plot_vline_draw)

I

image_show() (pyccapt.control.devices_test.camera_2.MainWindow method) img0_orig (pyccapt.control.gui.gui_cameras.SignalEmitter attribute) img1_orig (pyccapt.control.gui.gui_cameras.SignalEmitter attribute) img2_orig (pyccapt.control.gui.gui_cameras.SignalEmitter attribute) INDEPENDENT (pyccapt.calibration.leap_tools.leap_tools.RelationKind attribute) INDEXED (pyccapt.calibration.leap_tools.leap_tools.RelationKind attribute) INDEXED_VARIABLE (pyccapt.calibration.leap_tools.leap_tools.DataCategory attribute) init_tdc() (pyccapt.control.devices_test.tdc_roentec_t.TdcRoentec method) (pyccapt.control.tdc_roentdek.tdc_roentdek.TDC method) initialization_signal_generator() (in module pyccapt.control.apt.apt_exp_control_func) initialization_v_dc() (in module pyccapt.control.apt.apt_exp_control_func) initialization_v_p() (in module pyccapt.control.apt.apt_exp_control_func) initialize() (pyccapt.control.tdc_surface_concept.scTDC.Device method) initialize_camera_thread() (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) initialize_cameras() (pyccapt.control.devices.camera.CameraWorker method) initialize_cryovac() (in module pyccapt.control.devices.initialize_devices) initialize_detector_process() (pyccapt.control.apt.apt_exp_control.APT_Exp_Control method)

initialize_edwards_tic_buffer_chamber() (in module pyccapt.control.devices.initialize_devices) initialize_edwards_tic_cryo_load_lock() (in module pyccapt.control.devices.initialize_devices) initialize_edwards_tic_load_lock() (in module pyccapt.control.devices.initialize_devices) initialize_pfeiffer_gauges() (in module pyccapt.control.devices.initialize_devices) initialize_signal_generator() (in module pyccapt.control.devices.signal_generator) initUI() (pyccapt.calibration.core.gui_ion_select.MyWindow method) INT_32 (pyccapt.calibration.leap_tools.leap_tools.ByteFormat attribute) INT_64 (pyccapt.calibration.leap_tools.leap_tools.ByteFormat attribute) INTEGER (pyccapt.calibration.leap_tools.leap_tools.DataFormat attribute) InterbusEnable() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) interrupt_measurement() (pyccapt.control.tdc_surface_concept.scTDC.Device method) ion_names (pyccapt.calibration.clustering.clustering.MinMaxClusterResult attribute) (pyccapt.calibration.clustering.MinMaxClusterResult attribute) is_initialized() (pyccapt.control.tdc_surface_concept.scTDC.Device method) is_open() (pyccapt.control.tdc_surface_concept.scTDC.Pipe method) isosurface() (in module pyccapt.calibration.clustering.isosurface) (in module pyccapt.calibration.reconstructions.iso_surface)

J

joint_voltage_bowl_corr_main() (in module pyccapt.calibration.core.calibration)

L

label_ions() (in module pyccapt.calibration.leap_tools.leap_tools) labels (pyccapt.calibration.clustering.clustering.MinMaxClusterResult attribute) (pyccapt.calibration.clustering.MinMaxClusterResult attribute) laser_divition_factor_changed() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) laser_enable_clicked() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) laser_listen_clicked() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) laser_on_clicked() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) laser_power_changed() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) laser_pulse_energy_from_mat_file() (in module pyccapt.control.tdc_roentdek.cobold_tool) laser_rate_changed() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) laser_standby_clicked() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) laser_wavelegnth_changed() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) LaserControlWindow (class in pyccapt.control.gui.gui_laser_control) LF (pyccapt.control.devices.pfeiffer_gauges.TPG26x attribute) light_switch() (pyccapt.control.devices.camera.CameraWorker method) (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method)

line_select_callback() (in module pyccapt.calibration.data_tools.selectors_data) list_com_ports() (in module pyccapt.control.core.com_ports) Listen() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) load_and_concatenate_chunks() (in module pyccapt.control.tdc_surface_concept.tdc_surface_concept) load_and_copy_chunks_to_hdf() (in module pyccapt.control.core.control_data_tool) load_calibrated_h5() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_data_loader) load_config_file() (in module pyccapt.control.core.read_files) load_data() (in module pyccapt.calibration.data_tools.data_tools) (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_data_loader) load_electrode_items() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) load_elements() (in module pyccapt.calibration.core.ion_selection) load_tdc_raw_selection() (in module pyccapt.calibration.core.widgets) log_vacuum_levels() (in module pyccapt.control.devices.initialize_devices) logger_creator() (in module pyccapt.calibration.core.logging_library) (in module pyccapt.control.core.loggi)

M

main() (in module pyccapt.control.devices_test.serial_com_cryovac) main_ex_loop() (pyccapt.control.apt.apt_exp_control.APT_Exp_Control method) MainWindow (class in pyccapt.control.devices_test.camera_2) manual_background_fit() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) MASTER_RESET_CTR (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection attribute) master_rst_counter (pyccapt.control.tdc_surface_concept.scTDC.dld_event_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) max_buffered_data_len (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callbacks_params_t attribute) maximum_separation_clustering() (in module pyccapt.calibration.clustering) (in module pyccapt.calibration.clustering.clustering) mc2tof() (in module pyccapt.calibration.mc.tof_tools) mc_hist_plot() (in module pyccapt.calibration.core.tools) merge_by_range() (in module pyccapt.calibration.data_tools.merge_range) millisecond_countup (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_callbacks attribute) min_max_clustering() (in module pyccapt.calibration.clustering) (in module pyccapt.calibration.clustering.clustering) MinMaxClusterResult (class in pyccapt.calibration.clustering) (class in pyccapt.calibration.clustering.clustering) Mode() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) ModeRead() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) module pyccapt pyccapt.calibration pyccapt.calibration.clustering pyccapt.calibration.clustering.clustering pyccapt.calibration.clustering.isosurface pyccapt.calibration.core pyccapt.calibration.core.calibration pyccapt.calibration.core.gui_ion_select pyccapt.calibration.core.hist_bin_optimizer pyccapt.calibration.core.interactive_point_identification pyccapt.calibration.core.ion_selection pyccapt.calibration.core.logging_library pyccapt.calibration.core.mc_plot pyccapt.calibration.core.share_variables pyccapt.calibration.core.tools pyccapt.calibration.core.widgets pyccapt.calibration.data_tools pyccapt.calibration.data_tools.ato_tools pyccapt.calibration.data_tools.data_loadcrop pyccapt.calibration.data_tools.data_tools pyccapt.calibration.data_tools.dataset_path_qt pyccapt.calibration.data_tools.merge_range pyccapt.calibration.data_tools.plot_vline_draw pyccapt.calibration.data_tools.raw_data_surface_concept pyccapt.calibration.data_tools.run_dataset_path_qt pyccapt.calibration.data_tools.selectors_data pyccapt.calibration.leap_tools pyccapt.calibration.leap_tools.ccapt_tools pyccapt.calibration.leap_tools.leap_tools pyccapt.calibration.mc pyccapt.calibration.mc.mc_tools pyccapt.calibration.mc.tof_tools pyccapt.calibration.reconstructions pyccapt.calibration.reconstructions.crystal_helper pyccapt.calibration.reconstructions.density_map pyccapt.calibration.reconstructions.fft pyccapt.calibration.reconstructions.iso_surface pyccapt.calibration.reconstructions.rdf pyccapt.calibration.reconstructions.reconstruction pyccapt.calibration.reconstructions.sdm pyccapt.calibration.tutorials pyccapt.calibration.tutorials.tutorials_helpers pyccapt.calibration.tutorials.tutorials_helpers.helper_3d_reconstruction pyccapt.calibration.tutorials.tutorials_helpers.helper_calibration pyccapt.calibration.tutorials.tutorials_helpers.helper_data_loader pyccapt.calibration.tutorials.tutorials_helpers.helper_ion_list pyccapt.calibration.tutorials.tutorials_helpers.helper_ion_selection pyccapt.calibration.tutorials.tutorials_helpers.helper_mc_plot pyccapt.calibration.tutorials.tutorials_helpers.helper_special_crop pyccapt.calibration.tutorials.tutorials_helpers.helper_t_0_tune pyccapt.calibration.tutorials.tutorials_helpers.helper_temporal_crop pyccapt.calibration.tutorials.tutorials_helpers.helper_visualization pyccapt.control pyccapt.control.apt pyccapt.control.apt.apt_exp_control pyccapt.control.apt.apt_exp_control_func pyccapt.control.core pyccapt.control.core.baking_loging pyccapt.control.core.com_ports pyccapt.control.core.control_data_tool pyccapt.control.core.experiment_statistics pyccapt.control.core.hdf5_creator pyccapt.control.core.loggi pyccapt.control.core.read_files pyccapt.control.core.share_variables pyccapt.control.core.tof2mc_simple pyccapt.control.devices pyccapt.control.devices.camera pyccapt.control.devices.edwards_tic pyccapt.control.devices.email_send pyccapt.control.devices.initialize_devices pyccapt.control.devices.pfeiffer_gauges pyccapt.control.devices.signal_generator pyccapt.control.devices_test pyccapt.control.devices_test.camera_1 pyccapt.control.devices_test.camera_2 pyccapt.control.devices_test.counter pyccapt.control.devices_test.daqami pyccapt.control.devices_test.drs pyccapt.control.devices_test.gates pyccapt.control.devices_test.lamp_usb_switch pyccapt.control.devices_test.laser_nkt_origami pyccapt.control.devices_test.serial_com_cryovac pyccapt.control.devices_test.serial_com_edwards pyccapt.control.devices_test.serial_com_pfeiffer pyccapt.control.devices_test.serial_com_v_dc pyccapt.control.devices_test.serial_com_v_p pyccapt.control.devices_test.serial_ports_list pyccapt.control.devices_test.siglent_signal_generator pyccapt.control.devices_test.tdc_roentec_t pyccapt.control.devices_test.tdc_surface_concept_t_1 pyccapt.control.devices_test.tdc_surface_concept_t_2 pyccapt.control.devices_test.tdc_surface_concept_t_3 pyccapt.control.devices_test.thorlabs_controller pyccapt.control.drs pyccapt.control.drs.drs pyccapt.control.gui pyccapt.control.gui.gui_baking pyccapt.control.gui.gui_cameras pyccapt.control.gui.gui_gates pyccapt.control.gui.gui_laser_control pyccapt.control.gui.gui_main pyccapt.control.gui.gui_pumps_vacuum pyccapt.control.gui.gui_stage_control pyccapt.control.gui.gui_visualization pyccapt.control.nkt_photonics pyccapt.control.nkt_photonics.nktpbus_activate pyccapt.control.nkt_photonics.origamiClassCLI pyccapt.control.tdc_roentdek pyccapt.control.tdc_roentdek.cobold_tool pyccapt.control.tdc_roentdek.tdc_roentdek pyccapt.control.tdc_surface_concept pyccapt.control.tdc_surface_concept.scTDC pyccapt.control.tdc_surface_concept.tdc_surface_concept pyccapt.control.thorlabs_apt pyccapt.control.thorlabs_apt.thorlab_motor pyccapt.control.usb_switch pyccapt.control.usb_switch.usb_switch

modulo (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_dld_image_xyt_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_tdc_histo_params_t attribute) molecule_create() (in module pyccapt.calibration.core.ion_selection) molecule_manual() (in module pyccapt.calibration.core.ion_selection) mrp_calculation() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) ms_indices (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) ms_indices_len (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) multi_peak_bowl_corr_main() (in module pyccapt.calibration.core.calibration) multi_peak_voltage_corr_main() (in module pyccapt.calibration.core.calibration) MULTIPLE (pyccapt.calibration.leap_tools.leap_tools.RelationKind attribute) my_commands() (pyccapt.control.devices_test.serial_com_edwards.EdwardsAGC method) MyPyCCAPT (class in pyccapt.control.gui.gui_main) MyWindow (class in pyccapt.calibration.core.gui_ion_select)

N

n_clusters (pyccapt.calibration.clustering.clustering.MinMaxClusterResult property) (pyccapt.calibration.clustering.MinMaxClusterResult property) NAK (pyccapt.control.devices.pfeiffer_gauges.TPG26x attribute)

normalize_clustering_method() (in module pyccapt.calibration.clustering) (in module pyccapt.calibration.clustering.clustering) normalize_control_config() (in module pyccapt.control.core.read_files)

O

offset (pyccapt.control.tdc_surface_concept.scTDC.roi_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_tdc_histo_params_t attribute) OKBLUE (pyccapt.control.devices.initialize_devices.bcolors attribute) OKCYAN (pyccapt.control.devices.initialize_devices.bcolors attribute) OKGREEN (pyccapt.control.devices.initialize_devices.bcolors attribute) on_change() (in module pyccapt.calibration.core.widgets) on_change_charge() (in module pyccapt.calibration.core.widgets) on_change_charge_ions_selection() (in module pyccapt.calibration.core.widgets) on_change_ions_selection() (in module pyccapt.calibration.core.widgets) on_data() (pyccapt.control.devices_test.tdc_surface_concept_t_2.BufDataCB4 method) (pyccapt.control.devices_test.tdc_surface_concept_t_3.BufDataCB4 method) (pyccapt.control.tdc_surface_concept.scTDC.buffered_data_callbacks_pipe method) (pyccapt.control.tdc_surface_concept.tdc_surface_concept.BufDataCB4 method) on_dld_event() (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB1 method) (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB2 method) (pyccapt.control.tdc_surface_concept.scTDC.usercallbacks_pipe method) on_end_of_meas() (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB1 method) (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB2 method) (pyccapt.control.devices_test.tdc_surface_concept_t_2.BufDataCB4 method) (pyccapt.control.devices_test.tdc_surface_concept_t_3.BufDataCB4 method) (pyccapt.control.tdc_surface_concept.scTDC.buffered_data_callbacks_pipe method) (pyccapt.control.tdc_surface_concept.scTDC.usercallbacks_pipe method) (pyccapt.control.tdc_surface_concept.tdc_surface_concept.BufDataCB4 method) on_key_press() (pyccapt.calibration.data_tools.plot_vline_draw.HorizontalZoom method) (pyccapt.calibration.data_tools.plot_vline_draw.VerticalLineManager method) on_key_release() (pyccapt.calibration.data_tools.plot_vline_draw.HorizontalZoom method) (pyccapt.calibration.data_tools.plot_vline_draw.VerticalLineManager method) on_millisecond() (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB1 method) (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB2 method) (pyccapt.control.tdc_surface_concept.scTDC.usercallbacks_pipe method)

on_motion() (pyccapt.calibration.data_tools.plot_vline_draw.VerticalLineManager method) on_press() (pyccapt.calibration.data_tools.plot_vline_draw.VerticalLineManager method) on_release() (pyccapt.calibration.data_tools.plot_vline_draw.VerticalLineManager method) on_scroll() (pyccapt.calibration.data_tools.plot_vline_draw.HorizontalZoom method) (pyccapt.calibration.data_tools.plot_vline_draw.VerticalLineManager method) on_start_of_meas() (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB1 method) (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB2 method) (pyccapt.control.tdc_surface_concept.scTDC.usercallbacks_pipe method) on_statistics() (pyccapt.control.tdc_surface_concept.scTDC.usercallbacks_pipe method) on_stop_experiment_worker() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) on_tdc_event() (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB1 method) (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB2 method) (pyccapt.control.tdc_surface_concept.scTDC.usercallbacks_pipe method) onClickAdd() (in module pyccapt.calibration.core.widgets) onClickDelete() (in module pyccapt.calibration.core.widgets) onClickReset() (in module pyccapt.calibration.core.widgets) onselect() (in module pyccapt.calibration.data_tools.selectors_data) onSelectionChanged() (pyccapt.calibration.core.gui_ion_select.MyWindow method) open_baking_win() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) open_cameras_win() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) open_gates_win() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) open_laser_control_win() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) open_port() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) open_pumps_vacuum_win() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) open_stage_control_win() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) open_visualization_win() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) origClass (class in pyccapt.control.nkt_photonics.origamiClassCLI)

P

parameters (pyccapt.calibration.clustering.clustering.MinMaxClusterResult attribute) (pyccapt.calibration.clustering.MinMaxClusterResult attribute) parameters_changes() (pyccapt.control.gui.gui_visualization.Ui_Visualization method) parse_label_selection() (in module pyccapt.calibration.clustering) (in module pyccapt.calibration.clustering.clustering) parse_rng() (in module pyccapt.calibration.leap_tools.leap_tools) parse_rrng() (in module pyccapt.calibration.leap_tools.leap_tools) Pipe (class in pyccapt.control.tdc_surface_concept.scTDC) plot() (pyccapt.control.gui.gui_baking.Ui_Baking method) plot_background() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) plot_baking() (in module pyccapt.control.core.baking_loging) plot_color_legend() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) plot_crop_experiment_history() (in module pyccapt.calibration.data_tools.data_loadcrop) plot_crop_FDM() (in module pyccapt.calibration.data_tools.data_loadcrop) plot_crop_fdm() (in module pyccapt.calibration.data_tools.data_loadcrop) plot_density_map() (in module pyccapt.calibration.reconstructions.density_map) plot_FDM() (in module pyccapt.calibration.data_tools.data_loadcrop) plot_founded_range_loc() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) plot_hist_info_legend() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) plot_histogram() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) plot_horizontal_lines() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) plot_line_hist() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) plot_peaks() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) plot_range() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) plotly_fig2array() (in module pyccapt.calibration.reconstructions.iso_surface) pol2cart() (in module pyccapt.calibration.reconstructions.reconstruction) pos_to_ccapt() (in module pyccapt.calibration.leap_tools.ccapt_tools) pos_to_voxel() (in module pyccapt.calibration.clustering.isosurface) (in module pyccapt.calibration.reconstructions.iso_surface) Power() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) power_read_dv_green() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) PowerRead() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) precise_sleep() (pyccapt.control.apt.apt_exp_control.APT_Exp_Control method) pressure_gauge() (pyccapt.control.devices.pfeiffer_gauges.TPG26x method) pressure_gauges() (pyccapt.control.devices.pfeiffer_gauges.TPG26x method) pressure_unit() (pyccapt.control.devices.pfeiffer_gauges.TPG26x method) (pyccapt.control.devices_test.serial_com_edwards.EdwardsAGC method) priv (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callbacks_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_callbacks attribute) program_number() (pyccapt.control.devices.pfeiffer_gauges.TPG26x method) project_to_surface() (in module pyccapt.calibration.reconstructions.crystal_helper) projection() (in module pyccapt.calibration.reconstructions.reconstruction) pulse_voltage (pyccapt.control.gui.gui_main.SignalEmitter attribute) pump_switch_cryo_ll() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) pump_switch_ll() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) PumpsVacuumWindow (class in pyccapt.control.gui.gui_pumps_vacuum) pyccapt module pyccapt.calibration module pyccapt.calibration.clustering module pyccapt.calibration.clustering.clustering module pyccapt.calibration.clustering.isosurface module pyccapt.calibration.core module pyccapt.calibration.core.calibration module pyccapt.calibration.core.gui_ion_select module pyccapt.calibration.core.hist_bin_optimizer module pyccapt.calibration.core.interactive_point_identification module pyccapt.calibration.core.ion_selection module pyccapt.calibration.core.logging_library module pyccapt.calibration.core.mc_plot module pyccapt.calibration.core.share_variables module pyccapt.calibration.core.tools module pyccapt.calibration.core.widgets module pyccapt.calibration.data_tools module pyccapt.calibration.data_tools.ato_tools module pyccapt.calibration.data_tools.data_loadcrop module pyccapt.calibration.data_tools.data_tools module pyccapt.calibration.data_tools.dataset_path_qt module pyccapt.calibration.data_tools.merge_range module pyccapt.calibration.data_tools.plot_vline_draw module pyccapt.calibration.data_tools.raw_data_surface_concept module pyccapt.calibration.data_tools.run_dataset_path_qt module pyccapt.calibration.data_tools.selectors_data module pyccapt.calibration.leap_tools module pyccapt.calibration.leap_tools.ccapt_tools module pyccapt.calibration.leap_tools.leap_tools module pyccapt.calibration.mc module pyccapt.calibration.mc.mc_tools module pyccapt.calibration.mc.tof_tools module pyccapt.calibration.reconstructions module pyccapt.calibration.reconstructions.crystal_helper module pyccapt.calibration.reconstructions.density_map module pyccapt.calibration.reconstructions.fft module pyccapt.calibration.reconstructions.iso_surface module pyccapt.calibration.reconstructions.rdf module pyccapt.calibration.reconstructions.reconstruction module pyccapt.calibration.reconstructions.sdm module pyccapt.calibration.tutorials module pyccapt.calibration.tutorials.tutorials_helpers module pyccapt.calibration.tutorials.tutorials_helpers.helper_3d_reconstruction module pyccapt.calibration.tutorials.tutorials_helpers.helper_calibration module pyccapt.calibration.tutorials.tutorials_helpers.helper_data_loader module pyccapt.calibration.tutorials.tutorials_helpers.helper_ion_list module pyccapt.calibration.tutorials.tutorials_helpers.helper_ion_selection module pyccapt.calibration.tutorials.tutorials_helpers.helper_mc_plot module

pyccapt.calibration.tutorials.tutorials_helpers.helper_special_crop module pyccapt.calibration.tutorials.tutorials_helpers.helper_t_0_tune module pyccapt.calibration.tutorials.tutorials_helpers.helper_temporal_crop module pyccapt.calibration.tutorials.tutorials_helpers.helper_visualization module pyccapt.control module pyccapt.control.apt module pyccapt.control.apt.apt_exp_control module pyccapt.control.apt.apt_exp_control_func module pyccapt.control.core module pyccapt.control.core.baking_loging module pyccapt.control.core.com_ports module pyccapt.control.core.control_data_tool module pyccapt.control.core.experiment_statistics module pyccapt.control.core.hdf5_creator module pyccapt.control.core.loggi module pyccapt.control.core.read_files module pyccapt.control.core.share_variables module pyccapt.control.core.tof2mc_simple module pyccapt.control.devices module pyccapt.control.devices.camera module pyccapt.control.devices.edwards_tic module pyccapt.control.devices.email_send module pyccapt.control.devices.initialize_devices module pyccapt.control.devices.pfeiffer_gauges module pyccapt.control.devices.signal_generator module pyccapt.control.devices_test module pyccapt.control.devices_test.camera_1 module pyccapt.control.devices_test.camera_2 module pyccapt.control.devices_test.counter module pyccapt.control.devices_test.daqami module pyccapt.control.devices_test.drs module pyccapt.control.devices_test.gates module pyccapt.control.devices_test.lamp_usb_switch module pyccapt.control.devices_test.laser_nkt_origami module pyccapt.control.devices_test.serial_com_cryovac module pyccapt.control.devices_test.serial_com_edwards module pyccapt.control.devices_test.serial_com_pfeiffer module pyccapt.control.devices_test.serial_com_v_dc module pyccapt.control.devices_test.serial_com_v_p module pyccapt.control.devices_test.serial_ports_list module pyccapt.control.devices_test.siglent_signal_generator module pyccapt.control.devices_test.tdc_roentec_t module pyccapt.control.devices_test.tdc_surface_concept_t_1 module pyccapt.control.devices_test.tdc_surface_concept_t_2 module pyccapt.control.devices_test.tdc_surface_concept_t_3 module pyccapt.control.devices_test.thorlabs_controller module pyccapt.control.drs module pyccapt.control.drs.drs module pyccapt.control.gui module pyccapt.control.gui.gui_baking module pyccapt.control.gui.gui_cameras module pyccapt.control.gui.gui_gates module pyccapt.control.gui.gui_laser_control module pyccapt.control.gui.gui_main module pyccapt.control.gui.gui_pumps_vacuum module pyccapt.control.gui.gui_stage_control module pyccapt.control.gui.gui_visualization module pyccapt.control.nkt_photonics module pyccapt.control.nkt_photonics.nktpbus_activate module pyccapt.control.nkt_photonics.origamiClassCLI module pyccapt.control.tdc_roentdek module pyccapt.control.tdc_roentdek.cobold_tool module pyccapt.control.tdc_roentdek.tdc_roentdek module pyccapt.control.tdc_surface_concept module pyccapt.control.tdc_surface_concept.scTDC module pyccapt.control.tdc_surface_concept.tdc_surface_concept module pyccapt.control.thorlabs_apt module pyccapt.control.thorlabs_apt.thorlab_motor module pyccapt.control.usb_switch module pyccapt.control.usb_switch.usb_switch module pyccapt_raw_to_processed() (in module pyccapt.calibration.data_tools.data_tools) pyccapt_to_pymatgen() (in module pyccapt.calibration.reconstructions.crystal_helper)

R

ranging_dataset_create() (in module pyccapt.calibration.core.ion_selection) rank_candidate_assignments() (in module pyccapt.calibration.core.ion_selection) rdf() (in module pyccapt.calibration.reconstructions.rdf) read() (in module pyccapt.control.core.baking_loging) (pyccapt.control.gui.gui_baking.Ui_Baking method) read_apt() (in module pyccapt.calibration.leap_tools.leap_tools) read_average_power() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) read_epos() (in module pyccapt.calibration.leap_tools.leap_tools) read_hdf5() (in module pyccapt.calibration.data_tools.data_tools) read_json_file() (in module pyccapt.control.core.read_files) read_mat_files() (in module pyccapt.calibration.data_tools.data_tools) read_pos() (in module pyccapt.calibration.leap_tools.leap_tools) read_pressure() (pyccapt.control.devices_test.serial_com_edwards.EdwardsAGC method) read_range() (in module pyccapt.calibration.data_tools.data_tools) read_rng() (in module pyccapt.calibration.leap_tools.leap_tools) read_rrng() (in module pyccapt.calibration.leap_tools.leap_tools) read_text_lines() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) read_toml_file() (in module pyccapt.control.core.read_files) reader() (pyccapt.control.devices_test.drs.DRS method) (pyccapt.control.drs.drs.DRS method) reconstruction_2d_histogram() (in module pyccapt.calibration.reconstructions.reconstruction) reconstruction_plot() (in module pyccapt.calibration.reconstructions.iso_surface) (in module pyccapt.calibration.reconstructions.reconstruction) rectangle_box_selector() (in module pyccapt.calibration.data_tools.data_loadcrop) RelationKind (class in pyccapt.calibration.leap_tools.leap_tools) remove() (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection method) remove_all_lines() (pyccapt.calibration.data_tools.plot_vline_draw.VerticalLineManager method) remove_end_of_measurement_callback() (pyccapt.control.tdc_surface_concept.scTDC.Device method) remove_invalid_data() (in module pyccapt.calibration.data_tools.data_tools) remove_pipe() (pyccapt.control.tdc_surface_concept.scTDC.Device method) rename_a_category() (in module pyccapt.control.tdc_roentdek.cobold_tool) rename_subcategory() (in module pyccapt.control.core.control_data_tool) reopen() (pyccapt.control.tdc_surface_concept.scTDC.Pipe method) reserved (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callbacks_params_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.statistics_t attribute) reset() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_special_crop) (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_temporal_crop)

reset_back_on_click() (in module pyccapt.calibration.tutorials.tutorials_helpers.helper_ion_list) reset_button_color() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) reset_counters() (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB1 method) reset_heatmap() (pyccapt.control.gui.gui_visualization.Ui_Visualization method) reset_heatmap_clicked() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) reset_min_max() (pyccapt.control.devices_test.tdc_surface_concept_t_1.UCB2 method) resolve_result_data_file() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) resolve_result_file() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) restore_data_from_backup() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) retranslateUi() (pyccapt.control.gui.gui_baking.Ui_Baking method) (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) (pyccapt.control.gui.gui_gates.Ui_Gates method) (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) (pyccapt.control.gui.gui_stage_control.Ui_Stage_Control method) (pyccapt.control.gui.gui_visualization.Ui_Visualization method) roi (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_dld_image_xyt_params_t attribute) roi_t (class in pyccapt.control.tdc_surface_concept.scTDC) rotary_fig() (in module pyccapt.calibration.reconstructions.iso_surface) rotate_structure() (in module pyccapt.calibration.reconstructions.crystal_helper) rotate_z() (in module pyccapt.calibration.reconstructions.iso_surface) rs232_communication_test() (pyccapt.control.devices.pfeiffer_gauges.TPG26x method) run() (in module pyccapt.control.devices_test.tdc_surface_concept_t_2) (pyccapt.control.gui.gui_laser_control.Worker method) run_camera_window() (in module pyccapt.control.gui.gui_cameras) run_example() (in module pyccapt.control.devices_test.daqami) run_experiment() (in module pyccapt.control.apt.apt_exp_control) (pyccapt.control.apt.apt_exp_control.APT_Exp_Control method) run_experiment_measure() (in module pyccapt.control.tdc_surface_concept.tdc_surface_concept) run_tdc() (pyccapt.control.devices_test.tdc_roentec_t.TdcRoentec method) (pyccapt.control.tdc_roentdek.tdc_roentdek.TDC method) run_visualization_window() (in module pyccapt.control.gui.gui_visualization)

S

save_chunk_worker() (in module pyccapt.control.tdc_surface_concept.tdc_surface_concept) save_data() (in module pyccapt.calibration.data_tools.data_tools) save_data_csv() (pyccapt.control.gui.gui_baking.Ui_Baking method) save_fig() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) save_range() (in module pyccapt.calibration.data_tools.data_tools) save_statistics_apt() (in module pyccapt.control.core.experiment_statistics) sc3d_t (class in pyccapt.control.tdc_surface_concept.scTDC) sc3du_t (class in pyccapt.control.tdc_surface_concept.scTDC) sc_get_err_msg() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) sc_pipe_buf_callback_args (class in pyccapt.control.tdc_surface_concept.scTDC) sc_pipe_buf_callbacks_params_t (class in pyccapt.control.tdc_surface_concept.scTDC) sc_pipe_callback_params_t (class in pyccapt.control.tdc_surface_concept.scTDC) sc_pipe_callbacks (class in pyccapt.control.tdc_surface_concept.scTDC) sc_pipe_close2() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) sc_pipe_dld_image_xyt_params_t (class in pyccapt.control.tdc_surface_concept.scTDC) sc_pipe_open2() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) sc_pipe_read2() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) sc_pipe_statistics_params_t (class in pyccapt.control.tdc_surface_concept.scTDC) sc_pipe_tdc_histo_params_t (class in pyccapt.control.tdc_surface_concept.scTDC) sc_tdc_deinit2() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) sc_tdc_get_statistics2() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) sc_tdc_get_status2() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) sc_tdc_init_inifile() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) sc_tdc_interrupt2() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) sc_tdc_set_complete_callback2() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) sc_tdc_start_measure2() (pyccapt.control.tdc_surface_concept.scTDC.scTDClib method) scatter_plot() (in module pyccapt.calibration.reconstructions.reconstruction) scTDC_hdf5lib (class in pyccapt.control.tdc_surface_concept.scTDC) scTDClib (class in pyccapt.control.tdc_surface_concept.scTDC) sdm() (in module pyccapt.calibration.reconstructions.sdm) segment_ions() (in module pyccapt.calibration.clustering) (in module pyccapt.calibration.clustering.clustering) segment_ions_by_maximum_separation() (in module pyccapt.calibration.clustering) (in module pyccapt.calibration.clustering.clustering) segment_ions_by_min_max() (in module pyccapt.calibration.clustering) (in module pyccapt.calibration.clustering.clustering) selected_indices (pyccapt.calibration.clustering.clustering.MinMaxClusterResult attribute) (pyccapt.calibration.clustering.MinMaxClusterResult attribute) selected_mask (pyccapt.calibration.clustering.clustering.MinMaxClusterResult attribute) (pyccapt.calibration.clustering.MinMaxClusterResult attribute) selector() (pyccapt.calibration.core.mc_plot.AptHistPlotter method) send_email() (in module pyccapt.control.devices.email_send) send_info_email() (in module pyccapt.control.apt.apt_exp_control_func) ServiceMode() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) set_auto_exposure_time() (pyccapt.control.devices.camera.CameraWorker method) set_calibration_peak_range() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) set_calibration_selection_mask() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) set_default_exposure_time() (pyccapt.control.devices.camera.CameraWorker method) (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) set_exposure_time_1() (pyccapt.control.devices.camera.CameraWorker method) set_exposure_time_2() (pyccapt.control.devices.camera.CameraWorker method) set_exposure_time_3() (pyccapt.control.devices.camera.CameraWorker method) set_image() (pyccapt.control.devices_test.camera_2.MainWindow method) set_min_voltage_clicked() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) set_peak_range() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) set_result_data_directory() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) set_result_directory() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method) setup_parameters_changes() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) setupUi() (pyccapt.control.gui.gui_baking.Ui_Baking method) (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) (pyccapt.control.gui.gui_gates.Ui_Gates method) (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) (pyccapt.control.gui.gui_stage_control.Ui_Stage_Control method) (pyccapt.control.gui.gui_visualization.Ui_Visualization method) setWindowStyleFusion() (pyccapt.control.gui.gui_baking.BakingWindow method) (pyccapt.control.gui.gui_cameras.CamerasAlignmentWindow method) (pyccapt.control.gui.gui_gates.GatesWindow method) (pyccapt.control.gui.gui_laser_control.LaserControlWindow method) (pyccapt.control.gui.gui_pumps_vacuum.PumpsVacuumWindow method) (pyccapt.control.gui.gui_stage_control.StageControlWindow method) (pyccapt.control.gui.gui_visualization.VisualizationWindow method)

SharedVariablesBase (class in pyccapt.calibration.core) (class in pyccapt.calibration.core.share_variables) sign_counter (pyccapt.control.tdc_surface_concept.scTDC.tdc_event_t attribute) signal1bit (pyccapt.control.tdc_surface_concept.scTDC.dld_event_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) SIGNALBIT (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection attribute) SignalEmitter (class in pyccapt.control.gui.gui_cameras) (class in pyccapt.control.gui.gui_main) (class in pyccapt.control.gui.gui_pumps_vacuum) simulate_mass_spectrum() (in module pyccapt.calibration.core) SINGLE (pyccapt.calibration.leap_tools.leap_tools.RelationKind attribute) size (pyccapt.control.tdc_surface_concept.scTDC.roi_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_tdc_histo_params_t attribute) snapshot() (pyccapt.control.core.share_variables.Variables method) som_indices (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) som_indices_len (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) sortByColumn() (pyccapt.calibration.core.gui_ion_select.MyWindow method) speciemen_voltage (pyccapt.control.gui.gui_main.SignalEmitter attribute) spectrum_last_events() (pyccapt.control.gui.gui_visualization.Ui_Visualization method) spectrum_switch_mc_tof() (pyccapt.control.gui.gui_visualization.Ui_Visualization method) StageControlWindow (class in pyccapt.control.gui.gui_stage_control) Standby() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) start_capturing() (pyccapt.control.devices.camera.CameraWorker method) start_counter (pyccapt.control.tdc_surface_concept.scTDC.dld_event_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) (pyccapt.control.tdc_surface_concept.scTDC.tdc_event_t attribute) start_experiment_clicked() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) start_experiment_worker() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) start_measurement() (pyccapt.control.tdc_surface_concept.scTDC.buffered_data_callbacks_pipe method) start_measurement_sync() (pyccapt.control.tdc_surface_concept.scTDC.buffered_data_callbacks_pipe method) start_of_measure (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_callbacks attribute) STARTCTR (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection attribute) state_update() (in module pyccapt.control.devices.initialize_devices) statistics (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_callbacks attribute) statistics_t (class in pyccapt.control.tdc_surface_concept.scTDC) statistics_update() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) status_led() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) StatusMode() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) StatusRead() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) stereographic_projection() (in module pyccapt.calibration.reconstructions.crystal_helper) stop() (pyccapt.control.gui.gui_baking.Ui_Baking method) (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) (pyccapt.control.gui.gui_gates.Ui_Gates method) (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) (pyccapt.control.gui.gui_stage_control.Ui_Stage_Control method) (pyccapt.control.gui.gui_visualization.Ui_Visualization method) stop_capturing() (pyccapt.control.devices.camera.CameraWorker method) stop_experiment_clicked() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) stop_tdc() (pyccapt.control.devices_test.tdc_roentec_t.TdcRoentec method) (pyccapt.control.tdc_roentdek.tdc_roentdek.TDC method) store_df_to_csv() (in module pyccapt.calibration.data_tools.data_tools) store_df_to_hdf() (in module pyccapt.calibration.data_tools.data_tools) subdevice (pyccapt.control.tdc_surface_concept.scTDC.dld_event_t attribute) SUBDEVICE (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection attribute) subdevice (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) (pyccapt.control.tdc_surface_concept.scTDC.tdc_event_t attribute) sum (pyccapt.control.tdc_surface_concept.scTDC.dld_event_t attribute) super_user_access() (pyccapt.control.gui.gui_gates.Ui_Gates method) (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) switch_off() (pyccapt.control.devices_test.lamp_usb_switch.USBSwitch method) (pyccapt.control.usb_switch.usb_switch.USBSwitch method) switch_on() (pyccapt.control.devices_test.lamp_usb_switch.USBSwitch method) (pyccapt.control.usb_switch.usb_switch.USBSwitch method) switch_to_nktpbus_mode() (pyccapt.control.gui.gui_laser_control.Ui_Laser_Control method) sync_from_data() (pyccapt.calibration.core.share_variables.SharedVariablesBase method) (pyccapt.calibration.core.SharedVariablesBase method)

T

take_screenshot() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) TDC (class in pyccapt.control.tdc_roentdek.tdc_roentdek) tdc_event (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_callbacks attribute) tdc_event_t (class in pyccapt.control.tdc_surface_concept.scTDC) TdcRoentec (class in pyccapt.control.devices_test.tdc_roentec_t) Temp() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) temp_cryo_head (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) temp_cryo_head_inside (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) temp_ll (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) temp_stage (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) test1() (in module pyccapt.control.devices_test.tdc_surface_concept_t_1) TEXT (pyccapt.calibration.leap_tools.leap_tools.DataFormat attribute) thorlab() (in module pyccapt.control.devices_test.thorlabs_controller) (in module pyccapt.control.thorlabs_apt.thorlab_motor) TIME (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection attribute) time (pyccapt.control.tdc_surface_concept.scTDC.sc3d_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc3du_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute)

time_data (pyccapt.control.tdc_surface_concept.scTDC.tdc_event_t attribute) TIME_STAMP (pyccapt.calibration.leap_tools.leap_tools.ByteFormat attribute) time_tag (pyccapt.control.tdc_surface_concept.scTDC.dld_event_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callback_args attribute) (pyccapt.control.tdc_surface_concept.scTDC.tdc_event_t attribute) TIMETAG (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection attribute) tof2mc() (in module pyccapt.calibration.mc.mc_tools) tof2mcSimple() (in module pyccapt.calibration.mc.mc_tools) tof_2_mc() (in module pyccapt.control.core.tof2mc_simple) toggle_selector() (in module pyccapt.calibration.data_tools.selectors_data) total_ions (pyccapt.control.gui.gui_main.SignalEmitter attribute) TPG26x (class in pyccapt.control.devices.pfeiffer_gauges) TPG362 (class in pyccapt.control.devices.pfeiffer_gauges) transform_combination_and_isotopes() (in module pyccapt.calibration.core.ion_selection) turn_off_signal_generator() (in module pyccapt.control.devices.signal_generator)

U

UCB1 (class in pyccapt.control.devices_test.tdc_surface_concept_t_1) UCB2 (class in pyccapt.control.devices_test.tdc_surface_concept_t_1) Ui_Baking (class in pyccapt.control.gui.gui_baking) Ui_Cameras_Alignment (class in pyccapt.control.gui.gui_cameras) Ui_Gates (class in pyccapt.control.gui.gui_gates) Ui_Laser_Control (class in pyccapt.control.gui.gui_laser_control) Ui_Pumps_Vacuum (class in pyccapt.control.gui.gui_pumps_vacuum) Ui_PyCCAPT (class in pyccapt.control.gui.gui_main) Ui_Stage_Control (class in pyccapt.control.gui.gui_stage_control) Ui_Visualization (class in pyccapt.control.gui.gui_visualization) UNDERLINE (pyccapt.control.devices.initialize_devices.bcolors attribute) UNSIGNED_INT (pyccapt.calibration.leap_tools.leap_tools.DataFormat attribute) UNSPECIFIED (pyccapt.calibration.leap_tools.leap_tools.DataCategory attribute) (pyccapt.calibration.leap_tools.leap_tools.DataFormat attribute) (pyccapt.calibration.leap_tools.leap_tools.RelationKind attribute) update_cam_angle_o() (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) update_cam_b_o() (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) update_cam_s_o() (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) update_cameras() (pyccapt.control.devices.camera.CameraWorker method) update_detection_rate() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) update_elapsed_time() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) update_exposure_time() (pyccapt.control.gui.gui_cameras.Ui_Cameras_Alignment method) update_graphs() (pyccapt.control.gui.gui_visualization.Ui_Visualization method) update_graphs_helper() (pyccapt.control.gui.gui_visualization.Ui_Visualization method)

update_pulse_voltage() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) update_speciemen_voltage() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) update_target_temperature_cryo() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_target_temperature_ll() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_temperature_cryo() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_temperature_cryo_inside() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_temperature_ll() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_temperature_stage() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_total_ions() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) update_vacuum_buffer() (pyccapt.control.gui.gui_baking.Ui_Baking method) (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_vacuum_buffer_back() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_vacuum_cryo_load_lock() (pyccapt.control.gui.gui_baking.Ui_Baking method) (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_vacuum_cryo_load_lock_back() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_vacuum_load() (pyccapt.control.gui.gui_baking.Ui_Baking method) (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_vacuum_load_back() (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_vacuum_main() (pyccapt.control.gui.gui_baking.Ui_Baking method) (pyccapt.control.gui.gui_pumps_vacuum.Ui_Pumps_Vacuum method) update_variables() (pyccapt.calibration.data_tools.plot_vline_draw.VerticalLineManager method) USBSwitch (class in pyccapt.control.devices_test.lamp_usb_switch) (class in pyccapt.control.usb_switch.usb_switch) usercallbacks_pipe (class in pyccapt.control.tdc_surface_concept.scTDC)

V

vacuum_buffer (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) vacuum_buffer_back (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) vacuum_cryo_load_lock (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) vacuum_cryo_load_lock_back (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) vacuum_load_lock (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) vacuum_load_lock_back (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) vacuum_main (pyccapt.control.gui.gui_pumps_vacuum.SignalEmitter attribute) VARIABLE (pyccapt.calibration.leap_tools.leap_tools.DataCategory attribute) Variables (class in pyccapt.calibration.core) (class in pyccapt.calibration.core.share_variables) (class in pyccapt.control.core.share_variables)

variables (pyccapt.control.gui.gui_stage_control.Ui_Stage_Control attribute) version (pyccapt.control.tdc_surface_concept.scTDC.sc_pipe_buf_callbacks_params_t attribute) version() (pyccapt.control.tdc_surface_concept.scTDC.scTDC_hdf5lib method) VerticalLineManager (class in pyccapt.calibration.data_tools.plot_vline_draw) VisualizationWindow (class in pyccapt.control.gui.gui_visualization) voltage_corr_main() (in module pyccapt.calibration.core.calibration) voltage_correction() (in module pyccapt.calibration.core.calibration) volvis() (in module pyccapt.calibration.leap_tools.leap_tools)

W

WARNING (pyccapt.control.devices.initialize_devices.bcolors attribute) wavelength_change() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method) wavelength_read() (pyccapt.control.nkt_photonics.origamiClassCLI.origClass method)

WIDE_CHAR (pyccapt.calibration.leap_tools.leap_tools.ByteFormat attribute) wins_init() (pyccapt.control.gui.gui_main.Ui_PyCCAPT method) Worker (class in pyccapt.control.gui.gui_laser_control) write_rrng() (in module pyccapt.calibration.leap_tools.leap_tools)

X

X (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection attribute) x (pyccapt.control.tdc_surface_concept.scTDC.sc3d_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc3du_t attribute)

x_y_z_calculation_and_plot() (in module pyccapt.calibration.reconstructions.reconstruction)

Y

Y (pyccapt.control.tdc_surface_concept.scTDC.HDF5DataSelection attribute)

y (pyccapt.control.tdc_surface_concept.scTDC.sc3d_t attribute) (pyccapt.control.tdc_surface_concept.scTDC.sc3du_t attribute)

Z

zoom_to_x_range() (pyccapt.calibration.core.mc_plot.AptHistPlotter method)